HLA binding peptides

1. MHCPEP dataset
MHCPEP database (flat text format) reference

2. Datasets for specific MHC molecules
Datasets for development and testing of computational models for specific MHC molecules

HLA-A*0101
- Training dataset 1: IEDB A*0101 dataset (9mer) (reference)
- Training dataset 2: IEDB A*0101 dataset (10mer) (reference)
- Training dataset 3: CBS A*0101 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Validation dataset 3: 5T4 dataset (9mer) (reference)
- Validation dataset 4: Competition dataset (9mer) (reference)
- Validation dataset 5: Competition dataset (10mer) (reference)
- Combined validation dataset (9mer)
HLA-A*0201
- Training dataset 1: IEDB A*0201 dataset (9mer) (reference)
- Training dataset 2: IEDB A*0201 dataset (10mer) (reference)
- Training dataset 3: CBS A*0201 dataset (9mer) (reference)
- Training dataset 4: Multipred A*0201 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Validation dataset 3: 5T4 dataset (9mer) (reference)
- Validation dataset 4: Competition dataset (9mer) (reference)
- Validation dataset 5: Competition dataset (10mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-A*0301
- Training dataset 1: IEDB A*0301 dataset (9mer) (reference)
- Training dataset 2: IEDB A*0301 dataset (10mer) (reference)
- Training dataset 3: CBS A*0301 dataset (9mer) (reference)
- Training dataset 4: Multipred A*0301 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Validation dataset 3: 5T4 dataset (9mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-A*1101
- Training dataset 1: IEDB A*1101 dataset (9mer) (reference)
- Training dataset 2: IEDB A*1101 dataset (10mer) (reference)
- Training dataset 3: CBS A*1101 dataset (9mer) (reference)
- Training dataset 4: Multipred A*1101 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-A*2402
- Training dataset 1: IEDB A*2402 dataset (9mer) (reference)
- Training dataset 2: IEDB A*2402 dataset (10mer) (reference)
- Training dataset 3: CBS A*2402 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-B*0702
- Training dataset 1: IEDB B*0702 dataset (9mer) (reference)
- Training dataset 2: IEDB B*0702 dataset (10mer) (reference)
- Training dataset 3: CBS B*0702 dataset (9mer) (reference)
- Training dataset 4: Hotspot Hunter B*0702 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Validation dataset 3: 5T4 dataset (9mer) (reference)
- Validation dataset 4: Competition dataset (9mer) (reference)
- Validation dataset 5: Competition dataset (10mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-B*0801
- Training dataset 1: IEDB B*0801 dataset (9mer) (reference)
- Training dataset 3: CBS B*0801 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-B*1501
- Training dataset 1: IEDB B*1501 dataset (9mer) (reference)
- Training dataset 3: CBS B*1501 dataset (9mer) (reference)
- Validation dataset 1: survivin dataset (9mer) (reference)
- Validation dataset 2: CMV dataset (9mer) (reference)
- Combined validation dataset (9mer) (reference)
HLA-DRB1*0101
- Training dataset: IEDB DRB1*0101 dataset (reference)
- Validation dataset (references)
HLA-DRB1*0301
- Training dataset: IEDB DRB1*0301 dataset (reference)
- Validation dataset (references)
HLA-DRB1*0401
- Training dataset: IEDB DRB1*0401 dataset (reference)
- Validation dataset (references)
HLA-DRB1*0701
- Training dataset: IEDB DRB1*0701 dataset (reference)
- Validation dataset (references)
HLA-DRB1*1101
- Training dataset: IEDB DRB1*1101 dataset (reference)
- Validation dataset (references)
HLA-DRB1*1301
- Training dataset: IEDB database DRB1*1301 (reference)
- Validation dataset (references)
HLA-DRB1*1501
- Training dataset: IEDB DRB1*1501 dataset (reference)
- Validation dataset (references)

Version 1.0, Sep 2009. Developed by Bioinformatics Core at Cancer Vaccine Center, Dana-Farber Cancer Institute.