MULTIPRED2: Documentation

List of topics Details of the topics
  • Table 1. Peptide binding predictions can be performed in the listed alleles belonging to 13 class I supertypes [2,5,8].
    No.A1A2A3A24A26B7B8B27B44B58B62C1C4
    1A0101A0201A0301A2301A2601B0702B0801B1401B1553B1516B1501C0102C0202
    2A0103A0202A0302A2302A2602B0703B0802B1402B1801B1517B1502C0103C0203
    3A0106A0203A0304A2303A2603B0704B0807B1403B1803B1567B1505C0104C0204
    4A0107A0204A0305A2304A2604B0705B0809B1406B1805B1595B1512C0105C0205
    5A0108A0205A0306A2306A2605B0706B0811B1503B1806B5701B1513C0106C0206
    6A0109A0206A0307A2310A2606B0715B0813B1509B1810B5702B1514C0107C0307
    7A0110A0207A0308A2402A2607B0719B0815B1510B1811B5703B1515C0108C0308
    8A0112A0209A0310A2403A2608B0720B0818B1518B1813B5707B1519C0109C0310
    9A0114A0211A0312A2405A2609B0721B0820B1537B1815B5708B1520C0302C0315
    10A3002A0212A0313A2406A2610B0722B0821B1547B1819B5709B1525C0303C0401
    11A3003A0213A0314A2408A2612B0724B0822B1549B1820B5801B1528C0304C0403
    12A3004A0214A0316A2410A2613B0725B0823B1551B3701B5802B1530C0305C0404
    13A3006A0216A0317A2413A2614B0726B0824B1552B3704B5804B1531C0306C0405
    14A3009A0217A1101A2418A2615B0730B0825B1554B4001B5806B1533C0309C0406
    15A3012A0218A1102A2420A2617B0731 B1561B4002B5807B1534C0311C0407
    16A3201A0219A1103A2421A2618B0733 B1562B4005B5808B1538C0312C0408
    17A3202A0220A1104A2422A2619B0734 B1569B4006B5809B1539C0313C0410
    18A3205A0221A1105A2423A2621B0735 B1572B4011B5811B1540C0314C0501
    19A3206A0222A1107A2426A2623B0739 B1574B4014 B1548C0316C0503
    20A3207A0224A1108A2427A2624B0740 B1580B4015 B1550C0702C0504
    21A3209A0225A1109A2428A2626B0741 B1590B4016 B1560C0703C0505
    22A3210A0226A1110A2429 B0742 B1591B4020 B1563C0704C0506
    23A3601A0227A1112A2433 B0743 B1593B4026 B1565C0705C0602
    24A3602A0228A1113A2434 B1508 B1598B4029 B1570C0708C0603
    25A3604A0230A1114A2435 B3501 B1599B4035 B1575C0710C0604
    26 A0231A1115A2437 B3503 B2702B4039 B1578C0711C0605
    27 A0236A1116A2438 B3507 B2703B4040 B1581C0712C0606
    28 A0237A1120A2439 B3508 B2704B4049 B1582C0713C0607
    29 A0238A1123A2443 B3511 B2705B4050 B1583C0714C0608
    30 A0239A3103A2446 B3514 B2706B4053 B1585C0715C0609
    31 A0240A3104A2447 B3515 B2707B4054 B1588C0717C0701
    32 A0244A3105A2449 B3521 B2709B4055 B1592C0801C0706
    33 A0245A3106  B3522 B2710B4056 B1596C0802C0707
    34 A0246A3109  B3524 B2713B4057 B1597C0803C0709
    35 A0247A3111  B3531 B2715B4102 B3528C0804C0716
    36 A0248A3301  B3532 B2717B4103 B4021C0805C0718
    37 A0249A3303  B3533 B2725B4402 B4601C0806C1204
    38 A0251A3304  B3535 B2728B4403 B4603C0807C1205
    39 A0254A3305  B3536 B3801B4404 B4604C0808C1208
    40 A0256A3306  B3538 B3805B4407 B4605C0809C1502
    41 A0257A3307  B3541 B3809B4413 B5201C1202C1503
    42 A0258A3402  B3542 B3810B4416 B5202C1203C1504
    43 A0259A3403  B3543 B3811B4421 B5203C1206C1505
    44 A0261A3404  B3544 B3901B4422 B5204C1207C1506
    45 A0262A3406  B3545 B3902B4424 B5205C1402C1507
    46 A0263A6601  B3546 B3904B4426 B5207C1403C1508
    47 A0266A6602  B3554 B3909B4427 B5208C1404C1509
    48 A0267A6603  B3555 B3914B4428 B7805C1405C1510
    49 A0268A6604  B3557 B3918B4429 B9502C1601C1511
    50 A0269A6801  B3561 B3923B4430 B9504C1604C1602
    51 A0270A6803  B3910 B3926B4432    
    52 A0271A6804  B3916 B3927B4433    
    53 A0272A6808  B4201 B3929B4435    
    54 A0274A6809  B4204 B3930B4436    
    55 A0275A6810  B4205 B3932B4437    
    56 A0277A6812  B5101 B4012B4438    
    57 A0278A6813  B5102 B4801B4501    
    58 A0279A6814  B5103 B4802B4503    
    59 A0285A6816  B5105 B4803B4504    
    60 A0286A6819  B5108 B4804B4505    
    61 A6802A6821  B5109 B4805B4507    
    62 A6827A6822  B5116 B4809B4904    
    63 A6828A6824  B5117 B4810B5001    
    64 A6901A6825  B5118 B4811B5002    
    65 A9201A6826  B5119 B4812B5004    
    66 A9202A7401  B5121 B4813     
    67 A9203A7402  B5123 B7301     
    68 A9204A7403  B5124 B9503     
    69 A9205A7404  B5126       
    70 A9206A7405  B5128       
    71 A9207A7407  B5129       
    72 A9208A7408  B5130       
    73 A9209A7409  B5131       
    74 A9210A7411  B5132       
    75 A9211   B5133       
    76 A9212   B5134       
    77 A9214   B5135       
    78 A9215   B5136       
    79 A9216   B5138       
    80 A9217   B5139       
    81 A9218   B5301       
    82 A9219   B5302       
    83 A9220   B5306       
    84 A9221   B5308       
    85 A9222   B5310       
    86 A9223   B5401       
    87 A9224   B5403       
    88 A9226   B5404       
    89     B5406       
    90     B5407       
    91     B5501       
    92     B5502       
    93     B5503       
    94     B5504       
    95     B5505       
    96     B5507       
    97     B5509       
    98     B5510       
    99     B5515       
    100     B5517       
    101     B5519       
    102     B5601       
    103     B5603       
    104     B5605       
    105     B5613       
    106     B5615       
    107     B5616       
    108     B6701       
    109     B7801       
    110     B7802       
    111     B7804       
    [Go Back]

  • Table 2. Peptide binding predictions can be performed in the listed alleles belonging to 13 class II supertypes [4].
    No.DR1DR3DR4DR6DR7DR8DR9DR11DR12DR13DR14DR15DR16
    1DRB1*0101DRB1*0301DRB1*0401DRB1*1342DRB1*0701DRB1*0801DRB1*0901DRB1*1101DRB1*1201DRB1*1301DRB1*1117DRB1*1501DRB1*1601
    2DRB1*0102DRB1*0302DRB1*0402DRB1*1349DRB1*0703DRB1*0802DRB1*0902DRB1*1102DRB1*1202DRB1*1302DRB1*1326DRB1*1502DRB1*1602
    3DRB1*0103DRB1*0303DRB1*0403DRB1*1356DRB1*0704DRB1*0803DRB1*0903DRB1*1103DRB1*1203DRB1*1303DRB1*1354DRB1*1503DRB1*1603
    4DRB1*0104DRB1*0304DRB1*0404DRB1*1360DRB1*0705DRB1*0804DRB1*0904DRB1*1104DRB1*1204DRB1*1304DRB1*1401DRB1*1504DRB1*1604
    5DRB1*0105DRB1*0305DRB1*0405DRB1*1416DRB1*0707DRB1*0805DRB1*0905DRB1*1105DRB1*1205DRB1*1305DRB1*1402DRB1*1505DRB1*1605
    6DRB1*0106DRB1*0306DRB1*0406DRB1*1417DRB1*0709DRB1*0806DRB1*0906DRB1*1106DRB1*1206DRB1*1306DRB1*1403DRB1*1506DRB1*1607
    7DRB1*0107DRB1*0307DRB1*0407DRB1*1425DRB1*0712DRB1*0807 DRB1*1107DRB1*1207DRB1*1307DRB1*1404DRB1*1507DRB1*1608
    8DRB1*0108DRB1*0308DRB1*0408DRB1*1430DRB1*0714DRB1*0808 DRB1*1108DRB1*1208DRB1*1308DRB1*1405DRB1*1508DRB1*1609
    9DRB1*0109DRB1*0309DRB1*0409DRB1*1433 DRB1*0809 DRB1*1109DRB1*1209DRB1*1309DRB1*1406DRB1*1509DRB1*1610
    10DRB1*0110DRB1*0310DRB1*0410DRB1*1463 DRB1*0810 DRB1*1110DRB1*1210DRB1*1310DRB1*1407DRB1*1511DRB1*1611
    11DRB1*0111DRB1*0311DRB1*0411DRB1*1465 DRB1*0811 DRB1*1111DRB1*1211DRB1*1311DRB1*1408DRB1*1512 
    12DRB1*0112DRB1*0312DRB1*0412DRB1*1467 DRB1*0812 DRB1*1112DRB1*1212DRB1*1312DRB1*1409DRB1*1514 
    13DRB1*0113DRB1*0313DRB1*0413  DRB1*0813 DRB1*1113DRB1*1213DRB1*1313DRB1*1410DRB1*1515 
    14DRB1*0114DRB1*0314DRB1*0414  DRB1*0814 DRB1*1114DRB1*1214DRB1*1314DRB1*1411DRB1*1516 
    15DRB1*0115DRB1*0315DRB1*0415  DRB1*0815 DRB1*1115DRB1*1215DRB1*1315DRB1*1412DRB1*1518 
    16DRB1*0116DRB1*0316DRB1*0416  DRB1*0816 DRB1*1116 DRB1*1316DRB1*1413DRB1*1519 
    17 DRB1*0317DRB1*0417  DRB1*0817 DRB1*1118 DRB1*1317DRB1*1414DRB1*1520 
    18 DRB1*0318DRB1*0418  DRB1*0818 DRB1*1119 DRB1*1318DRB1*1418DRB1*1522 
    19 DRB1*0319DRB1*0419  DRB1*0819 DRB1*1120 DRB1*1319DRB1*1419  
    20 DRB1*0320DRB1*0420  DRB1*0821 DRB1*1121 DRB1*1320DRB1*1420  
    21 DRB1*0321DRB1*0421  DRB1*0822 DRB1*1123 DRB1*1321DRB1*1421  
    22 DRB1*0322DRB1*0422  DRB1*0823 DRB1*1124 DRB1*1322DRB1*1422  
    23 DRB1*0323DRB1*0423  DRB1*0824 DRB1*1125 DRB1*1323DRB1*1423  
    24 DRB1*0324DRB1*0424  DRB1*0825 DRB1*1126 DRB1*1327DRB1*1424  
    25 DRB1*0325DRB1*0425  DRB1*0826 DRB1*1127 DRB1*1328DRB1*1426  
    26 DRB1*0326DRB1*0426  DRB1*0827 DRB1*1128 DRB1*1329DRB1*1427  
    27 DRB1*0327DRB1*0427  DRB1*0828 DRB1*1129 DRB1*1331DRB1*1428  
    28 DRB1*0328DRB1*0428  DRB1*0829 DRB1*1130 DRB1*1332DRB1*1429  
    29 DRB1*0329DRB1*0429  DRB1*0830 DRB1*1131 DRB1*1333DRB1*1431  
    30 DRB1*0330DRB1*0430  DRB1*0831 DRB1*1132 DRB1*1334DRB1*1432  
    31 DRB1*0331DRB1*0431  DRB1*1415 DRB1*1133 DRB1*1335DRB1*1434  
    32 DRB1*0332DRB1*0432    DRB1*1134 DRB1*1336DRB1*1435  
    33 DRB1*0333DRB1*0433    DRB1*1135 DRB1*1337DRB1*1436  
    34 DRB1*0334DRB1*0434    DRB1*1136 DRB1*1338DRB1*1437  
    35 DRB1*0335DRB1*0435    DRB1*1137 DRB1*1339DRB1*1438  
    36 DRB1*0706DRB1*0436    DRB1*1138 DRB1*1340DRB1*1439  
    37 DRB1*0708DRB1*0437    DRB1*1139 DRB1*1341DRB1*1440  
    38 DRB1*0711DRB1*0438    DRB1*1140 DRB1*1343DRB1*1441  
    39 DRB1*0713DRB1*0439    DRB1*1141 DRB1*1345DRB1*1443  
    40 DRB1*1359DRB1*0440    DRB1*1142 DRB1*1348DRB1*1444  
    41  DRB1*0441    DRB1*1143 DRB1*1351DRB1*1445  
    42  DRB1*0442    DRB1*1144 DRB1*1352DRB1*1446  
    43  DRB1*0443    DRB1*1145 DRB1*1353DRB1*1447  
    44  DRB1*0444    DRB1*1146 DRB1*1357DRB1*1448  
    45  DRB1*0445    DRB1*1147 DRB1*1358DRB1*1449  
    46  DRB1*0446    DRB1*1148 DRB1*1361DRB1*1450  
    47  DRB1*0447    DRB1*1149 DRB1*1363DRB1*1451  
    48  DRB1*0448    DRB1*1150 DRB1*1364DRB1*1452  
    49  DRB1*0449    DRB1*1151 DRB1*1365DRB1*1453  
    50  DRB1*0450    DRB1*1152 DRB1*1366DRB1*1454  
    51  DRB1*0451    DRB1*1153 DRB1*1367DRB1*1455  
    52  DRB1*0452    DRB1*1154 DRB1*1368DRB1*1456  
    53  DRB1*0453    DRB1*1155 DRB1*1369DRB1*1458  
    54  DRB1*0454    DRB1*1156 DRB1*1370DRB1*1459  
    55  DRB1*0455    DRB1*1157 DRB1*1371DRB1*1460  
    56  DRB1*0456    DRB1*1158 DRB1*1372DRB1*1461  
    57  DRB1*0457    DRB1*1159 DRB1*1373DRB1*1462  
    58  DRB1*0458    DRB1*1160 DRB1*1374DRB1*1464  
    59  DRB1*0459    DRB1*1161 DRB1*1376DRB1*1468  
    60  DRB1*0460    DRB1*1162 DRB1*1378   
    61  DRB1*0461    DRB1*1324 DRB1*1379   
    62  DRB1*0462    DRB1*1325     
    63  DRB1*0463    DRB1*1346     
    64  DRB1*0464    DRB1*1350     
    65  DRB1*1457    DRB1*1362     
    [Go Back]

  • Reference
    1. Cao K, Hollenbach J, Shi X, Shi W, Chopek M, Fernandez-Vina MA. Analysis of the frequencies of HLA-A, B, and C alleles and haplotypes in the five major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol. 2001 Sep;62(9):1009-30.
    2. Doytchinova IA, Guan P, Flower DR. Identifiying human MHC supertypes using bioinformatic methods.J Immunol. 2004 Apr 1;172(7):4314-23.
    3. Heiny AT, Miotto O, Srinivasan KN, Khan AM, Zhang GL, Brusic V, Tan TW, August JT. Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.PLoS One. 2007 Nov 21;2(11):e1190.
    4. Holdsworth R, Hurley CK, Marsh SG, Lau M, Noreen HJ, Kempenich JH, Setterholm M, Maiers M. The HLA dictionary 2008: a summary of HLA-A, -B, -C, -DRB1/3/4/5, and -DQB1 alleles and their association with serologically defined HLA-A, -B, -C, -DR, and -DQ antigens. Tissue Antigens. 2009 Feb;73(2):95-170.
    5. Lund, O., Nielsen, M., Kesmir, C., Petersen, A. G., Lundegaard, C., Worning, P., Sylvester-Hvid, C., Lamberth, K., Roder, G., Justesen, S., Buus, S., and Brunak, S. (2004) Definition of supertypes for HLA molecules using clustering of specificity matrices, Immunogenetics 55, 797-810.
    6. Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, Roder G, Peters B, Sette A, Lund O, Buus S. NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence. PLoS One. 2007 Aug 29;2(8):e796.
    7. Nielsen M, Lundegaard C, Blicher T, Peters B, Sette A, Justesen S, Buus S, Lund O. Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan. PLoS Comput Biol. 2008 Jul 4;4(7):e1000107.
    8. Sidney J, Peters B, Frahm N, Brander C, Sette A. HLA class I supertypes: a revised and updated classification. BMC Immunol. 2008 Jan 22;9:1.
    [Go Back]


Version 1.0, Feburary 2010. Developed by Bioinformatics Core at Cancer Vaccine Center, Dana-Farber Cancer Institute.