Data sets for classification of PBMC using supervised machine learning

The datasets in this Web Page were used in the study "Artificial Neural Networks for classification of single cell gene expression". This study is a part of collaborative research "Supervised Machine Learning for Single Cell Transcriptomics". The collaborators on this project come from the University of Nottingham Ningbo China, HiLab at Metropolitan College - Boston University, Translational Immuno-Genomics Lab at Dana-Farber Cancer Institute/Harvard Medical School, and School of Life Sciences and Technology at Tongji University.

If you use these data sets, please cite:
Shaikh RA, Zhong J, Lyu M, Lin S, Keskin D, Zhang G, Chitkushev L, Brusic V. Classification of Five Cell Types from PBMC Samples using Single Cell Transcriptomics and Artificial Neural Networks. In IEEE Int. Conf. Bioinformatics Biomed. 2019, 2207-2213.

1 10xG_B-cells-CD19-10085.zip
2 10xG_Monocytes-CD14_2612.zip
3 10xG_NK-cells-CD56_8385.zip
4 10xG_T-cells-CD4-CD25-Regulatory_10263.zip
5 10xG_T-cells-CD4-CD45RA-CD25neg-Naive_10479.zip
6 10xG_T-cells-CD4-Helper_11213.zip
7 10xG_T-cells-CD4-Memory_102254.zip
8 10xG_T-cells-CD8-CD45RA-Naive-Cytotoxic_11953.zip
9 10xG_T-cells-CD8-Cytotoxic_10209.zip
10 BroadS1_B-cells_1660.zip
11 BroadS1_DC_142.zip
12 BroadS1_Monocytes_1661.zip
13 BroadS1_NK-cells_1394.zip
14 BroadS1_T-cells_8326.zip
15 BroadS2_B-cells-pbmc1_v2_288.zip
16 BroadS2_B-cells-pbmc1_v2_388.zip
17 BroadS2_B-cells-pbmc1_v3_346.zip
18 BroadS2_B-cells-pbmc2_v2_862.zip
19 BroadS2_DC-pbmc1_v2_33.zip
20 BroadS2_DC-pbmc1_v2_55.zip
21 BroadS2_DC-pbmc1_v3_38.zip
22 BroadS2_DC-pbmc2_v2_76.zip
23 BroadS2_Monocytes-CD14-pbmc1_v2_379.zip
24 BroadS2_Monocytes-CD14-pbmc1_v2_640.zip
25 BroadS2_Monocytes-CD14-pbmc1_v3_354.zip
26 BroadS2_Monocytes-CD14-pbmc2_v2_436.zip
27 BroadS2_Monocytes-CD16-pbmc1_v2_102.zip
28 BroadS2_Monocytes-CD16-pbmc1_v2_73.zip
29 BroadS2_Monocytes-CD16-pbmc1_v3_98.zip
30 BroadS2_Monocytes-CD16-pbmc2_v2_50.zip
31 BroadS2_NK-cells-pbmc1_v2_166.zip
32 BroadS2_NK-cells-pbmc1_v2_263.zip
33 BroadS2_NK-cells-pbmc1_v3_194.zip
34 BroadS2_NK-cells-pbmc2_v2_219.zip
35 BroadS2_T-cells-CD4-pbmc1_v2_550.zip
36 BroadS2_T-cells-CD4-pbmc1_v2_908.zip
37 BroadS2_T-cells-CD4-pbmc1_v3_960.zip
38 BroadS2_T-cells-CD4-pbmc2_v2_962.zip
39 BroadS2_T-cells-CD8-pbmc1_v2_1174.zip
40 BroadS2_T-cells-CD8-pbmc1_v2_954.zip
41 BroadS2_T-cells-CD8-pbmc1_v3_962.zip
42 BroadS2_T-cells-CD8-pbmc2_v2_694.zip
43 BroadS2_pDC-pbmc1_v2_12.zip
44 BroadS2_pDC-pbmc1_v2_26.zip
45 BroadS2_pDC-pbmc2_v2_30.zip
46 GEO_B-cells-GSM3258348_1760.zip
47 GEO_Monocytes-GSM2773408_425.zip
48 GEO_Monocytes-GSM2773409_431.zip
49 GEO_NK-cells-GSM3544603_NK_std_309.zip
50 GEO_T-cells-GSM3087628_CD8_5662.zip
51 GEO_T-cells-GSM3209407_CD4_965.zip
52 GEO_T-cells-GSM3209408_CD4-CCR5-CD69neg_435.zip
53 GEO_T-cells-GSM3544603_CD4_222.zip
54 GEO_T-cells-GSM3544603_CD8_310.zip
55 GEO_T-cells-GSM3544603_MAIT_382.zip
56 GEO_T-cells-GSM3544603_gd1_std_284.zip
57 GEO_T-cells-GSM3544603_gd2_std_204.zip
58 GEO_T-cells-GSM3544603_iNKT_325.zip